Sorghum SSR marker characteristics











Marker_Name

Motive

Forward_Primer

Reverse_Primer

Reference

T_a

Size_Range

Allele_Nb

LG*

Chromosome*

gpsb067

(GT)10

TAGTCCATACACCTTTCA

TCTCTCACACACATTCTTC

unpublished, Agropolis-Cirad-Genoplante

49

170-180

6

8 (H)

SBI08

gpsb069

(TC)12

CCCATAATACTTGACCTTC

ACTTACTCCCTCTGTCCC

unpublished, Agropolis-Cirad-Genoplante

50

189-197

4

9 (I)

SBI06

gpsb089

(TG)9

ATCAGGTACAGCAGGTAGG

ATGCATCATGGCTGGT

unpublished, Agropolis-Cirad-Genoplante

50

165-173

4

1 (A)

SBI01

gpsb123

(CA)7+(GA)5

ATAGATGTTGACGAAGCA

GTGGTATGGGACTGGA

unpublished, Agropolis-Cirad-Genoplante

50

288-296

5

8 (H)

SBI08

gpsb148

(TC)3+(CA)5

CAACCACAAACCAAGAG

ATAGAAATGGGGTGGAG

unpublished, Agropolis-Cirad-Genoplante

50

135-147

4

5 (E)

SBI07

gpsb151

(CT)12

ATACCAAGTTTCCTTTACCT

GTTGGGGGAGAGTTTT

unpublished, Agropolis-Cirad-Genoplante

50

106-128

7

4 (D)

SBI04

Xisep0107

(TGG)4

GCCGTAACAGAGAAGGATGG

TTTCCGCTACCTCAAAAACC

unpublished, Icrisat

59

199-205

3

3 (C)

SBI03

Xisep0310

(CCAAT)4

TGCCTTGTGCCTTGTTTATCT

GGATCGATGCCTATCTCGTC

unpublished, Icrisat

60

164-219

3

2 (B)

SBI02

mSbCIR223

(AC)6

CGTTCCAATGACTTTTCTTC

GCCAATGTGGTGTGATAAAT

unpublished, Agropolis-Cirad-Genoplante

55

108-118

5

2 (B)

SBI02

mSbCIR238

(AC)26

AGAAGAAAAGGGGTAAGAGC

CGAGAAACAATTACATGAACC

unpublished, Agropolis-Cirad-Genoplante

55

79-107

8

2 (B)

SBI02

mSbCIR240

(TG)9

GTTCTTGGCCCTACTGAAT

TCACCTGTAACCCTGTCTTC

unpublished, Agropolis-Cirad-Genoplante

55

108-112

2

8 (H)

SBI08

mSbCIR246

(CA)7.5

TTTTGTTGCACTTTTGAGC

GATGATAGCGACCACAAATC

unpublished, Agropolis-Cirad-Genoplante

55

98-100

2

5 (E)

SBI07

mSbCIR248

(GT)7.5

GTTGGTCAGTGGTGGATAAA

ACTCCCATGTGCTGAATCT

unpublished, Agropolis-Cirad-Genoplante

56

89-101

4

10 (J)

SBI05

mSbCIR262

(CATG)3.25

GCACCAAAATCAGCGTCT

CCATTTACCCGTGGATTAGT

unpublished, Agropolis-Cirad-Genoplante

57

208-220

4

7 (G)

SBI10

mSbCIR276

(AC)9

CCCCAATCTAACTATTTGGT

GAGGCTGAGATGCTCTGT

unpublished, Agropolis-Cirad-Genoplante

53

230-234

4

3 (C)

SBI03

mSbCIR283

(CT)8 (GT)8.5

TCCCTTCTGAGCTTGTAAAT

CAAGTCACTACCAAATGCAC

unpublished, Agropolis-Cirad-Genoplante

54

113-139

8

7 (G)

SBI10

mSbCIR286

(AC)9

GCTTCTATACTCCCCTCCAC

TTTATGGTAGGATGCTCTGC

unpublished, Agropolis-Cirad-Genoplante

55

112-134

4

1 (A)

SBI01

mSbCIR300

(GT)9

TTGAGAGCGGCGAGGTAA

AAAAGCCCAAGTCTCAGTGCTA

unpublished, Agropolis-Cirad-Genoplante

61

104-110

4

5 (E)

SBI07

mSbCIR306

(GT)7

ATACTCTCGTACTCGGCTCA

GCCACTCTTTACTTTTCTTCTG

unpublished, Agropolis-Cirad-Genoplante

56

120-124

3

1 (A)

SBI01

mSbCIR329

(AC)8.5

GCAGAACATCACTCAAAGAA

TACCTAAGGCAGGGATTG

unpublished, Agropolis-Cirad-Genoplante

55

109-117

5

10 (J)

SBI05

Xgap72

(AG)16

TGCCACCACTCTGGAAAAGGCTA

CTGAGGACTGCCCCAAATGTAGG

Brown et al., 1996

55

183-203

7

9 (I)

SBI06

Xgap206

(AC)13/(AG)20

ATTCATCATCCTCATCCTCGTAGAA

AAAAACCAACCCGACCCACTC

Brown et al., 1996

55

106-146

10

6 (F)

SBI09

Xgap84

(AG)14

CGCTCTCGGGATGAATGA

TAACGGACCACTAACAAATGATT

Brown et al., 1996

55

183-217

7

2 (B)

SBI02

SbAGB02

(AG)35

CTCTGATATGTCGTTGTGCT

ATAGAGAGGATAGCTTATAGCTCA

Taramino et al., 1997

55

96-154

6

5 (E)

SBI07

Xcup02

(GCA)6

GACGCAGCTTTGCTCCTATC

GTCCAACCAACCCACGTATC

Schloss et al., 2002

54

192-204

4

6 (F)

SBI09

Xcup11

(GCTA)4

TACCGCCATGTCATCATCAG

CGTATCGCAAGCTGTGTTTG

Schloss et al., 2002

54

165-172

2

3 (C)

SBI03

Xcup14

(AG)10

TACATCACAGCAGGGACAGG

CTGGAAAGCCGAGCAGTATG

Schloss et al., 2002

54

211-225

4

3 (C)

SBI03

Xcup53

(TTTA)5

GCAGGAGTATAGGCAGAGGC

CGACATGACAAGCTCAAACG

Schloss et al., 2002

54

186-198

3

1 (A)

SBI01

Xcup61

(CAG)7

TTAGCATGTCCACCACAACC

AAAGCAACTCGTCTGATCCC

Schloss et al., 2002

54

198-201

2

3 (C)

SBI03

Xcup62

(GAA)6

CGAGAAGATCGAGAGAACCC

TGAAGACGACGACGACAGAC

Schloss et al., 2002

54

190-193

2

1 (A)

SBI01

Xcup63

(GGATGC)4

GTAAAGGGCAAGGCAACAAG

GCCCTACAAAATCTGCAAGC

Schloss et al., 2002

54

133-145

3

2 (B)

SBI02

Xtxp010

(CT)14

ATACTATCAAGAGGGGAGC

AGTACTAGCCACACGTCAC

Kong et al., 2000

50

135-151

4

6 (F)

SBI09

Xtxp012

(CT)22

AGATCTGGCGGCAACG

AGTCACCCATCGATCATC

Kong et al., 2000

55

161-205

8

4 (D)

SBI04

Xtxp015

(TC)16

CACAAACACTAGTGCCTTATC

CATAGACACCTAGGCCATC

Kong et al., 2000

55

199-223

6

10 (J)

SBI05

Xtxp021

(AG)18

GAGCTGCCATAGATTTGGTCG

ACCTCGTCCCACCTTTGTTG

Kong et al., 2000

60

169-199

7

4 (D)

SBI04

Xtxp040

(GGA)7

CAGCAACTTGCACTTGTC

GGGAGCAATTTGGCACTAG

Kong et al., 2000

55

129-141

4

5 (E)

SBI07

Xtxp057

(GT)21

GGAACTTTTGACGGGTAGTGC

CGATCGTGATGTCCCAATC

Kong et al., 2000

55

223-257

8

9 (I)

SBI06

Xtxp114

(AGG)8

CGTCTTCTACCGCGTCCT

CATAATCCCACTCAACAATCC

Kong et al., 2000

50

211-217

3

3 (C)

SBI03

Xtxp136

(GCA)5

GCGAATAGCATCTTACAACA

ACTGATCATTGGCAGGAC

Kong et al., 2000

55

240-243

2

10 (J)

SBI05

Xtxp141

(GA)23

TGTATGGCCTAGCTTATCT

CAACAAGCCAACCTAAA

Kong et al., 2000

55

135-167

9

7 (G)

SBI10

Xtxp145

(AG)22

GTTCCTCCTGCCATTACT

CTTCCGCACATCCAC

Kong et al., 2000

55

208-244

8

9 (I)

SBI06

Xtxp265

(GAA)19

GTCTACAGGCGTGCAAATAAAA

TTACCATGCTACCCCTAAAAGTGG

Kong et al., 2000

55

186-234

7

9 (I)

SBI06

Xtxp273

(TTG)20

GTACCCATTTAAATTGTTTGCAGTAG

CAGAGGAGGAGGAAGAGAAGG

Kong et al., 2000

55

169-193

6

8 (H)

SBI08

Xtxp278

(TTG)12

GGGTTTCAACTCTAGCCTACCGAACTTCCT

ATGCCTCATCATGGTTCGTTTTGCTT

Kong et al., 2000

50

243-252

3

5 (E)

SBI07

Xtxp295

(TC)19

AAATCATGCATCCATGTTCGTCTTC

CTCCCGCTACAAGAGTACATTCATAGCTTA

Kong et al., 2000

55

153-183

8

5 (E)

SBI07

Xtxp320

(AAG)20

TAAACTAGACCATATACTGCCATGATAA

GTGCAAATAAGGGCTAGAGTGTT

Bhattramakki et al., 2000

54

257-287

8

1 (A)

SBI01

Xtxp321

(GT)4+(AT)6+(CT)21

TAACCCAAGCCTGAGCATAAGA

CCCATTCACACATGAGACGAG

Kong et al., 2000

55

192-252

9

8 (H)

SBI08

Xtxp339

(GGA)7

CCGCACTCTCCACTCT

CGGAACACAGGGAAGG

Kong et al., 2000

55

191-203

3

6 (F)

SBI09











*: LG is nomenclature of genetic map from Menz et al. 2002 - Chromosome is nomenclature of Kim et al. 2004