Sorghum SSR marker characteristics
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Marker_Name |
Motive |
Forward_Primer |
Reverse_Primer |
Reference |
T_a |
Size_Range |
Allele_Nb |
LG* |
Chromosome* |
gpsb067 |
(GT)10 |
TAGTCCATACACCTTTCA |
TCTCTCACACACATTCTTC |
unpublished, Agropolis-Cirad-Genoplante |
49 |
170-180 |
6 |
8 (H) |
SBI08 |
gpsb069 |
(TC)12 |
CCCATAATACTTGACCTTC |
ACTTACTCCCTCTGTCCC |
unpublished, Agropolis-Cirad-Genoplante |
50 |
189-197 |
4 |
9 (I) |
SBI06 |
gpsb089 |
(TG)9 |
ATCAGGTACAGCAGGTAGG |
ATGCATCATGGCTGGT |
unpublished, Agropolis-Cirad-Genoplante |
50 |
165-173 |
4 |
1 (A) |
SBI01 |
gpsb123 |
(CA)7+(GA)5 |
ATAGATGTTGACGAAGCA |
GTGGTATGGGACTGGA |
unpublished, Agropolis-Cirad-Genoplante |
50 |
288-296 |
5 |
8 (H) |
SBI08 |
gpsb148 |
(TC)3+(CA)5 |
CAACCACAAACCAAGAG |
ATAGAAATGGGGTGGAG |
unpublished, Agropolis-Cirad-Genoplante |
50 |
135-147 |
4 |
5 (E) |
SBI07 |
gpsb151 |
(CT)12 |
ATACCAAGTTTCCTTTACCT |
GTTGGGGGAGAGTTTT |
unpublished, Agropolis-Cirad-Genoplante |
50 |
106-128 |
7 |
4 (D) |
SBI04 |
Xisep0107 |
(TGG)4 |
GCCGTAACAGAGAAGGATGG |
TTTCCGCTACCTCAAAAACC |
unpublished, Icrisat |
59 |
199-205 |
3 |
3 (C) |
SBI03 |
Xisep0310 |
(CCAAT)4 |
TGCCTTGTGCCTTGTTTATCT |
GGATCGATGCCTATCTCGTC |
unpublished, Icrisat |
60 |
164-219 |
3 |
2 (B) |
SBI02 |
mSbCIR223 |
(AC)6 |
CGTTCCAATGACTTTTCTTC |
GCCAATGTGGTGTGATAAAT |
unpublished, Agropolis-Cirad-Genoplante |
55 |
108-118 |
5 |
2 (B) |
SBI02 |
mSbCIR238 |
(AC)26 |
AGAAGAAAAGGGGTAAGAGC |
CGAGAAACAATTACATGAACC |
unpublished, Agropolis-Cirad-Genoplante |
55 |
79-107 |
8 |
2 (B) |
SBI02 |
mSbCIR240 |
(TG)9 |
GTTCTTGGCCCTACTGAAT |
TCACCTGTAACCCTGTCTTC |
unpublished, Agropolis-Cirad-Genoplante |
55 |
108-112 |
2 |
8 (H) |
SBI08 |
mSbCIR246 |
(CA)7.5 |
TTTTGTTGCACTTTTGAGC |
GATGATAGCGACCACAAATC |
unpublished, Agropolis-Cirad-Genoplante |
55 |
98-100 |
2 |
5 (E) |
SBI07 |
mSbCIR248 |
(GT)7.5 |
GTTGGTCAGTGGTGGATAAA |
ACTCCCATGTGCTGAATCT |
unpublished, Agropolis-Cirad-Genoplante |
56 |
89-101 |
4 |
10 (J) |
SBI05 |
mSbCIR262 |
(CATG)3.25 |
GCACCAAAATCAGCGTCT |
CCATTTACCCGTGGATTAGT |
unpublished, Agropolis-Cirad-Genoplante |
57 |
208-220 |
4 |
7 (G) |
SBI10 |
mSbCIR276 |
(AC)9 |
CCCCAATCTAACTATTTGGT |
GAGGCTGAGATGCTCTGT |
unpublished, Agropolis-Cirad-Genoplante |
53 |
230-234 |
4 |
3 (C) |
SBI03 |
mSbCIR283 |
(CT)8 (GT)8.5 |
TCCCTTCTGAGCTTGTAAAT |
CAAGTCACTACCAAATGCAC |
unpublished, Agropolis-Cirad-Genoplante |
54 |
113-139 |
8 |
7 (G) |
SBI10 |
mSbCIR286 |
(AC)9 |
GCTTCTATACTCCCCTCCAC |
TTTATGGTAGGATGCTCTGC |
unpublished, Agropolis-Cirad-Genoplante |
55 |
112-134 |
4 |
1 (A) |
SBI01 |
mSbCIR300 |
(GT)9 |
TTGAGAGCGGCGAGGTAA |
AAAAGCCCAAGTCTCAGTGCTA |
unpublished, Agropolis-Cirad-Genoplante |
61 |
104-110 |
4 |
5 (E) |
SBI07 |
mSbCIR306 |
(GT)7 |
ATACTCTCGTACTCGGCTCA |
GCCACTCTTTACTTTTCTTCTG |
unpublished, Agropolis-Cirad-Genoplante |
56 |
120-124 |
3 |
1 (A) |
SBI01 |
mSbCIR329 |
(AC)8.5 |
GCAGAACATCACTCAAAGAA |
TACCTAAGGCAGGGATTG |
unpublished, Agropolis-Cirad-Genoplante |
55 |
109-117 |
5 |
10 (J) |
SBI05 |
Xgap72 |
(AG)16 |
TGCCACCACTCTGGAAAAGGCTA |
CTGAGGACTGCCCCAAATGTAGG |
Brown et al., 1996 |
55 |
183-203 |
7 |
9 (I) |
SBI06 |
Xgap206 |
(AC)13/(AG)20 |
ATTCATCATCCTCATCCTCGTAGAA |
AAAAACCAACCCGACCCACTC |
Brown et al., 1996 |
55 |
106-146 |
10 |
6 (F) |
SBI09 |
Xgap84 |
(AG)14 |
CGCTCTCGGGATGAATGA |
TAACGGACCACTAACAAATGATT |
Brown et al., 1996 |
55 |
183-217 |
7 |
2 (B) |
SBI02 |
SbAGB02 |
(AG)35 |
CTCTGATATGTCGTTGTGCT |
ATAGAGAGGATAGCTTATAGCTCA |
Taramino et al., 1997 |
55 |
96-154 |
6 |
5 (E) |
SBI07 |
Xcup02 |
(GCA)6 |
GACGCAGCTTTGCTCCTATC |
GTCCAACCAACCCACGTATC |
Schloss et al., 2002 |
54 |
192-204 |
4 |
6 (F) |
SBI09 |
Xcup11 |
(GCTA)4 |
TACCGCCATGTCATCATCAG |
CGTATCGCAAGCTGTGTTTG |
Schloss et al., 2002 |
54 |
165-172 |
2 |
3 (C) |
SBI03 |
Xcup14 |
(AG)10 |
TACATCACAGCAGGGACAGG |
CTGGAAAGCCGAGCAGTATG |
Schloss et al., 2002 |
54 |
211-225 |
4 |
3 (C) |
SBI03 |
Xcup53 |
(TTTA)5 |
GCAGGAGTATAGGCAGAGGC |
CGACATGACAAGCTCAAACG |
Schloss et al., 2002 |
54 |
186-198 |
3 |
1 (A) |
SBI01 |
Xcup61 |
(CAG)7 |
TTAGCATGTCCACCACAACC |
AAAGCAACTCGTCTGATCCC |
Schloss et al., 2002 |
54 |
198-201 |
2 |
3 (C) |
SBI03 |
Xcup62 |
(GAA)6 |
CGAGAAGATCGAGAGAACCC |
TGAAGACGACGACGACAGAC |
Schloss et al., 2002 |
54 |
190-193 |
2 |
1 (A) |
SBI01 |
Xcup63 |
(GGATGC)4 |
GTAAAGGGCAAGGCAACAAG |
GCCCTACAAAATCTGCAAGC |
Schloss et al., 2002 |
54 |
133-145 |
3 |
2 (B) |
SBI02 |
Xtxp010 |
(CT)14 |
ATACTATCAAGAGGGGAGC |
AGTACTAGCCACACGTCAC |
Kong et al., 2000 |
50 |
135-151 |
4 |
6 (F) |
SBI09 |
Xtxp012 |
(CT)22 |
AGATCTGGCGGCAACG |
AGTCACCCATCGATCATC |
Kong et al., 2000 |
55 |
161-205 |
8 |
4 (D) |
SBI04 |
Xtxp015 |
(TC)16 |
CACAAACACTAGTGCCTTATC |
CATAGACACCTAGGCCATC |
Kong et al., 2000 |
55 |
199-223 |
6 |
10 (J) |
SBI05 |
Xtxp021 |
(AG)18 |
GAGCTGCCATAGATTTGGTCG |
ACCTCGTCCCACCTTTGTTG |
Kong et al., 2000 |
60 |
169-199 |
7 |
4 (D) |
SBI04 |
Xtxp040 |
(GGA)7 |
CAGCAACTTGCACTTGTC |
GGGAGCAATTTGGCACTAG |
Kong et al., 2000 |
55 |
129-141 |
4 |
5 (E) |
SBI07 |
Xtxp057 |
(GT)21 |
GGAACTTTTGACGGGTAGTGC |
CGATCGTGATGTCCCAATC |
Kong et al., 2000 |
55 |
223-257 |
8 |
9 (I) |
SBI06 |
Xtxp114 |
(AGG)8 |
CGTCTTCTACCGCGTCCT |
CATAATCCCACTCAACAATCC |
Kong et al., 2000 |
50 |
211-217 |
3 |
3 (C) |
SBI03 |
Xtxp136 |
(GCA)5 |
GCGAATAGCATCTTACAACA |
ACTGATCATTGGCAGGAC |
Kong et al., 2000 |
55 |
240-243 |
2 |
10 (J) |
SBI05 |
Xtxp141 |
(GA)23 |
TGTATGGCCTAGCTTATCT |
CAACAAGCCAACCTAAA |
Kong et al., 2000 |
55 |
135-167 |
9 |
7 (G) |
SBI10 |
Xtxp145 |
(AG)22 |
GTTCCTCCTGCCATTACT |
CTTCCGCACATCCAC |
Kong et al., 2000 |
55 |
208-244 |
8 |
9 (I) |
SBI06 |
Xtxp265 |
(GAA)19 |
GTCTACAGGCGTGCAAATAAAA |
TTACCATGCTACCCCTAAAAGTGG |
Kong et al., 2000 |
55 |
186-234 |
7 |
9 (I) |
SBI06 |
Xtxp273 |
(TTG)20 |
GTACCCATTTAAATTGTTTGCAGTAG |
CAGAGGAGGAGGAAGAGAAGG |
Kong et al., 2000 |
55 |
169-193 |
6 |
8 (H) |
SBI08 |
Xtxp278 |
(TTG)12 |
GGGTTTCAACTCTAGCCTACCGAACTTCCT |
ATGCCTCATCATGGTTCGTTTTGCTT |
Kong et al., 2000 |
50 |
243-252 |
3 |
5 (E) |
SBI07 |
Xtxp295 |
(TC)19 |
AAATCATGCATCCATGTTCGTCTTC |
CTCCCGCTACAAGAGTACATTCATAGCTTA |
Kong et al., 2000 |
55 |
153-183 |
8 |
5 (E) |
SBI07 |
Xtxp320 |
(AAG)20 |
TAAACTAGACCATATACTGCCATGATAA |
GTGCAAATAAGGGCTAGAGTGTT |
Bhattramakki et al., 2000 |
54 |
257-287 |
8 |
1 (A) |
SBI01 |
Xtxp321 |
(GT)4+(AT)6+(CT)21 |
TAACCCAAGCCTGAGCATAAGA |
CCCATTCACACATGAGACGAG |
Kong et al., 2000 |
55 |
192-252 |
9 |
8 (H) |
SBI08 |
Xtxp339 |
(GGA)7 |
CCGCACTCTCCACTCT |
CGGAACACAGGGAAGG |
Kong et al., 2000 |
55 |
191-203 |
3 |
6 (F) |
SBI09 |
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*: LG is nomenclature of genetic map from Menz et al. 2002 - Chromosome is nomenclature of Kim et al. 2004 |
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